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  • Use cases
  • Changelog

Site Navigation

  • Use cases
  • Changelog
  • Data lineage
    • Project flow
      • GWS CRIPSRa analysis
      • Perform single cell analysis, integrate with CRISPRa screen
    • Analysis flow
  • Registries
    • Gene Ontology (GO)
    • CellTypist
    • Standardize metadata on-the-fly
    • RDF export & SPARQL queries
  • Data types
    • scRNA-seq
      • Standardize and append a batch of data
      • Query artifacts
      • Analyze a collection in memory
      • Train a machine learning model on a collection
      • Concatenate datasets to a single array store
    • Bulk RNA-seq
    • Flow cytometry
      • Append a new dataset
      • Query & integrate data
      • Analyze the collection and save a result
    • Spatial
    • Multi-modal
  • Access public ontologies
    • Gene
    • Protein
    • Organism
    • CellLine
    • CellType
    • CellMarker
    • Tissue
    • Disease
    • Phenotype
    • Pathway
    • ExperimentalFactor
    • DevelopmentalStage
    • Ethnicity

Data types¶

  • scRNA-seq
  • Bulk RNA-seq
  • Flow cytometry
  • Spatial
  • Multi-modal

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RDF export & SPARQL queries

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scRNA-seq
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